1.7.0 — Internet Archive Html5 Uploader

Software for motif discovery and next generation sequencing analysis

HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and ChIP-Seq analysis. It is a collection of command line programs for unix-style operating systems written in mostly perl and c++. Homer was primarily written as a de novo motif discovery algorithm that is well suited for finding 8-12 bp motifs in large scale genomics data.

Hardware Requirements (recommended): 2+ Gb memory (4-8+ Gb), 10+ Gb Hard Drive space (50+ Gb)
Software Requirements: Unix compatible OS (or cygwin), perl, gcc, make, wget (optional for full functionality: R, DESeq2, blat, bedGraphToBigWig, liftOver)
License: GPLv3

HOMER works on pretty much any Linux/UNIX systems, including MacOS (if Xcode compilers are installed) and on Windows using either cygwin or a Linux subsystem.

If you are looking specifically for HOMER2, you are in the right place! HOMER2 is integrated into HOMER.

Full Program Download

1.7.0 — Internet Archive Html5 Uploader

The Internet Archive HTML5 Uploader is a web-based application that allows users to upload files to the Internet Archive's servers. The uploader is built using HTML5, a markup language that enables the creation of interactive web pages. This technology allows for a seamless and efficient uploading process, making it easy for users to contribute to the Internet Archive's collections.

The Internet Archive, a renowned digital library, has been a pioneer in preserving and making accessible vast amounts of cultural heritage content. One of the key tools that facilitate this mission is the HTML5 Uploader, a software application that enables users to upload files to the Internet Archive's vast repository. The latest version, 1.7.0, brings a host of exciting features and improvements that make it an indispensable tool for users. In this blog post, we'll delve into the details of the Internet Archive HTML5 Uploader 1.7.0 and explore its capabilities. internet archive html5 uploader 1.7.0

The Internet Archive HTML5 Uploader 1.7.0 is a powerful tool for preserving digital culture. With its improved file handling, batch uploading, and resume upload features, the uploader makes it easy for users to contribute to the Internet Archive's collections. The uploader's enhanced accessibility features ensure that users with disabilities can participate in preserving digital culture. As the Internet Archive continues to play a vital role in preserving our digital heritage, the HTML5 Uploader 1.7.0 is an essential tool for anyone interested in contributing to this mission. The Internet Archive HTML5 Uploader is a web-based

Program Components and Older Versions

homer2 program - key executable for HOMER motif discovery (homerCppOnly.*.zip). (This archive actually contains all of the c++ executable, not just homer2). Unzip in the desired directory and simply type "make" to compile the program.

The configuration script really doesn't deal with older versions, but you can download older versions yourself should you really feel like using inferior data or software!

Old Versions of HOMER Software
Old Versions of Organism Packages
Old Versions of Promoter Packages
Old Versions of Genome Packages

Update Information

Change Log - Short description of recent changes

update.txt - Current HOMER configuration list (Currently support human hg17/hg18/hg19, mouse mm8/mm9, rat rn4, X. tropicalis xenTro2, drosophila dm3, and C. elegans ce6, Zebrafish danRer7, yeast sacCer2, Arabidopsis tair10, Rice msu6, Pombe ASM294v1)

Can't figure something out? Questions, comments, concerns, or other feedback:
cbenner@ucsd.edu